/var/lib/<name> is a symlink into /var/lib/private for those, so find stopped at the link and the state dump never copied their databases (schema, puppy-tracker, todo, …). Follow it with find -H.
atuin
manatee
homepage
komga-reader
443
puppy-tracker
puppy.ppp.pm
solo-referee
ssh
personal
work
phone-gps
org
tailscale
tmux